PLB/ZOOL 444 - Ecology and Analysis of Communities

Spring 2008 Semester - 4 hours

Floating marsh "flotant", southern Louisiana

Click here to download the course syllabus

Homework #2 information (there will be a total of 3 EXCEL files and one WORD file with DECODA instructions).

PCA_problem2.xls

You may use either of the following files for your NMDS exercise.  The first file contains data from a weedy plant dataset compiled from numerous agricultural fields in the Southeast and Midwest (courtesy of Dr. Gibson and Karla Gage).  The environmental variables that can be tested in the vector fitting are latitude and longitude.  The second file contains vegetation data collected along an altitudinal gradient at Mt. Field in central Tasmania, Australia (courtesy of Dr. Minchin).  All of the variables in the environmental worksheet should be included in the vector fitting analysis.

DECODA_1.doc

MDS_problem2.xls

MDS_problem3.xls

DECODA_2.doc

Anosim_exercise1.xls (See note below)

Gagnon & Platt_2008_Ecology.pdf

Final_dataset.xls

Final_envvar.xls

PCA_problem for final.xls

The Anosim_exercise dataset is from the Congaree Swamp National Park in South Carolina.  This park contains the largest remaining tract of old-growth bottomland hardwood forest.  The tree data have been collected from a number of plots scattered randomly through this floodplain. The a priori groups represent ridges (3),  bottomland flats (2)  , and backswamps (1), which differ hydrologically.  You are going to test whether there is statistically significant differences in composition among the groups using ANOSIM and then compare your findings from that analysis with a cluster analysis.   

Lectures and Papers

Introduction to communities.ppt

History of community concept.ppt

Interspecific Competition & Niches.ppt

Interspecific Competition_experiments.ppt

Interspecific Interactions.ppt

Clements.pdf

Gleason.pdf

Tilman's resource ratio.pdf

Predation.ppt

Predation2.ppt

Connell & Slatyer.pdf

Succession2.ppt

Community Models.ppt

human footprint.ppt

Labs

Homework #1

Diversity.ppt

Sim_Dissim measures.ppt

Introduction to Ordination.ppt

Polar Ordination

PCA.ppt

PCA Example

Hill's index

Download animal dataset

Download forest data

Direct gradient

MDS.ppt

Marsh.xls

ANOSIM.ppt

ANOSIM groups

Correspondence Analysis.ppt

DCA.ppt

Clustering.ppt

Kapalga_comm.csv

Kapalga_env.csv